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1. Algo trading != HFT, Quite different
2. I don't think one guy need to know all of Unix internals, C, FPGA, Market Microstructure, Signal processing, Econometrics, Low level networking as well as FIX, Stats and data mining, Probability at a deep level, Game theory, AI.
Usually firms have dedicated developers to do FPFA/Unix/Low lever networking, FIX... these are skill sets for developers/engineerings, and quants knows Market Microstructure/Sig Proc/Stat/Data Mining.... etc. It is not hard to find a phd with such knowledge, in my opinion, a Stat/IE/ecom phd or EE/CS phd on ML/Stochastic control, etc.
3. MFE programs do not do a good job in providing courses for HFT or quant trading strategies (NYU does not do a good job I think...even don't have machine learning class on the list, while Courant CS has a very good ML faculty...), that is why not many MFE grads went into HFT/quant trading strategies (unless he/she had a phd) business. I think the main reason is, no one wants to teach other people how to make money...
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